Included Software
CloudyCluster comes with a good selection of open HPC libraries, tools and software.
Included HPC Software, Libraries and Tools
| “Software / Libraries” | Type |
|---|---|
| .NET Core | .Net Lib |
| Ambertools | Molecular Dynamics |
| ANN | Neural Net Lib |
| ATLAS | Linear Algebra Lib |
| Biopython | Bioinformatics Python Lib |
| BLAS | Linear Algebra Lib |
| Blast | Bioinformatics |
| Blender | 3D Graphics |
| Boost | Portable C++ Libs |
| Burrows-Wheeler Aligner | Genomics |
| CESM | Earth System Modeling |
| Cuda Toolkit | GPU |
| Dakota | Parallel OO Framework |
| Docker | Containers |
| FFMPEG | Video Processing |
| FFTW | Discrete Fourier Transform Lib |
| FLTK | Cross-Platform C++ GUI Toolkit |
| foam-extend | Computational Fluid Dynamics |
| Galaxy | Computational Biology |
| GATK | Genome Toolkit |
| GCC | Compiler |
| Gengetopt | CL Option Tools |
| GRIB2 | Data Format Lib |
| GROMACS | Molecular Dynamics |
| GSL | Scientific Library |
| Hadoop | Map Reduce |
| HDF5 | Data Format Lib |
| ImageMagick | Image Processing |
| JasPer | Infrastructure |
| Jupyter | Interactive Computing Interface |
| LAMMPS | Molecular Dynamics |
| matplotlib | Python Plotting Lib |
| mlpack | Machine Learning |
| mpich | MPI |
| mxnet | Machine Learning |
| NCAR | Scientific Visualization |
| NCL | Scientific Data Processing |
| NCO | NetCDF operator toolkit |
| NetCDF | Data Format Lib |
| NumPy | Numerical Python Lib |
| nwchem | Molecular dynamics |
| Octave | Math Lib |
| OpenCV | Computer Vision |
| OpenFoam | Computational Fluid Dynamics |
| OpenFoam_esi | Computational Fluid Dynamics |
| OpenMPI | MPI |
| OrangeFS | Parallel Storage |
| Pandas | Python Data Analysis Lib |
| papi | Performance Monitoring API |
| paraview | Scientific visualization |
| PICARD | HTS Data Manipulation |
| PROJ | coordinate transformation Lib |
| PyMOL | Scientific visualization |
| Python + many standard libs | Python |
| Quantum Espresso | Nanoscale modeling |
| Queue | Queue Lib |
| R (package) | Language |
| Relion | cryo-EM Lib |
| Rmpi | R MPI Version |
| SaltStack | System Util |
| SAMtools | SAM Alignment Tools |
| scikit-learn | Machine Learning |
| SciPy | Scientific Python |
| Singularity | Container Management |
| Slurm | Scheduler |
| SU2 | Computational Fluid Dynamics |
| SWIG | C/C++ High Level Lang Lib |
| TensorFlow | Machine Learning |
| theano | Machine Learning |
| Torque | Scheduler |
| UDUNITS | Unit Coversion Lib |
| VTK | Scientific visualization |
| WGRIB | GRIB Manipulation Toolkit |
| WRF | Weather Research |